
Meta-analysis Identifies Endothelin-3 as a Prognostic Biomarker in Gastrointestinal Stromal Tumors
Prognostic modalities have long been essential for selecting adjuvant treatment in patients with Gastro Intestinal Stromal Tumor (GIST). The anatomic site of origin is a prognostic factor for GIST; GISTs originating in the small intestine (I-GISTs) have a considerably worse prognosis than GISTs originating in the stomach (S-GISTs). By studying the molecular backgrounds of GISTs with different sites of origin, it may be possible to identify novel prognostic biomarkers. This study aimed to identify prognostic biomarkers for GIST by comparing the molecular backgrounds and prognoses of S-GISTs and I-GISTs. A meta-analysis of 3 studies was performed to identify Differentially Expressed Genes (DEGs) between S-GISTs and I-GISTs. Receiver Operating Characteristic (ROC) analyses were performed for the DEGs, which were then ranked according to the areas under the ROC curves that they achieved. The Kaplan–Meier Method and log-rank test were used to estimate and compare survival curves. Protein-Protein Interaction (PPI) network analysis was performed using the DEGs, to identify hub genes associated with the malignant biological potential of GISTs. Overall, we identified 149 DEGs between S-GISTs and I-GISTs. Comparing I-GISTs with S-GISTs, 89 DEGs were up-regulated and 60 DEGs were down-regulated. Endothelin-3 (EDN3), which was up-regulated in I-GISTs, had the greatest area under the ROC curve of the 149 DEGs. Kaplan–Meier curves showed that high EDN3 expression was associated with significantly shorter disease-free survival in patients with S-GISTs. The EDN3 expression level was higher for high-risk patients with S-GIST than for low-risk patients with S-GISTs. Based on the PPI network of DEGs, EDN3 was identified as a hub gene related to the malignant biological potential of GIST. In summary, our study identified genes that are differentially expressed between S-GISTs and I-GISTs. EDN3 expression may have prognostic value for patients with GIST. Further validation studies of EDN3 are warranted for clinical application.
Zhiwei Qiao¹, Fusako Kito² and Tadashi Kondo¹*