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New Perspective on Tappeh Hesar

Since the last decades, scientists have tried to answer where human beings originated and how spread all over the world. In this way, ancient human remains can play a fundamental role to answer these questions. Tappeh Hesar is a prehistoric site located in the Damghan city (northeastern Iran). This place history dates back to more than 4 000 years. Due to the city’s key position in trade and communications, it has always been an attractive site for archaeologists. In this study ancient DNA was extracted from one human skeletal remains by considering all precautions. All mitochondrial hypervariable segments (HVS-I, HVS-II and HVSIII) were analyzed using sequencing. After comparison HVS sequences with revised Cambridge Reference Sequence (rCRS), the consensus sequences showed three transitions in HVS-II. Haplogroup H32 was determined for this sample. Haplogroup H is a Eurasian haplogroup which likely originated in Southwest Asia ∼25–30 thousand years ago (kya) and entered Europe ∼23–28 kya. Nearly half of Europeans have this haplogroup and there is a considerable frequency of haplogroup H in Middle East. Evidences indicate long-term presence of this haplogroup at western Asia.

Peyman Zargari1, Sajad Habibi Azarian1, Kamran Ahmadi1, Parastoo Erfanmanesh1 and Mahmoud Tavallaie1*


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Graph Theory: A Powerful Research Tool for Biological Network Analysis

In the pre-genome era, traditional molecular biology provides very informative knowledge on how individual bio-molecule, i.e. DNA, RNA and protein, perform biological functions. Networks of interactions among bio-molecules are fundamental to all biological processes; for example, the Gene Regulatory Network (GRN) can be described as a complex network of genes regulated by protein binding. Cellular processes are controlled by various types of biochemical networks; such as (i) metabolic networks, (ii) Protein-Protein Interaction (PPI) networks, (iii) GRN, and (iv) signal transduction networks. Biochemical networks are complex in nature; they consist of a large number of bio-molecules, interacting with each other give rise to biological responses and stabilities. In the post-genome era, it is more productive to investigate how bio-molecules regulate or cooperate on a system level. The graph theory approach is a powerful tool for investigating the underlying topological structures of different molecular networks. A great diversity of graph theoretical notions is discussed to characterize biological networks. T he theory of complex networks plays an important role, ranging from computer science, sociology, engineering and physics, to bioinformatics etc. Within the fields of bioinformatics, potential applications of network analysis include drug target identification, determining bio molecules’ pathways and function, and designing effective strategies for treating various diseases. Molecular networks are the basis of biological processes. Such networks can be decomposed into smaller modules, also known as network motifs. These motifs show interesting dynamical behaviors, in which co-operatively effects between the motif components play a critical role in human diseases. Some of the network motifs are interconnected which can be merged together and form more complex structures, the so-called Coupled Motif Structures (CMS). These structures exhibit mixed dynamical behavior, which may lead biological organisms to perform specific functions.

Chien-Hung Huang*


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Carbapenem-Resistant Acinetobacter baumannii: Epidemiology and Prevention in Iran

Over the past 10 years, dissemination of Carbapenem-Resistant Acinetobacter baumannii (CRAB) has led to an increase in the prevalence of Carbapenem-resistant Gram negative bacteria in the Iran. Carbapenems are used as a first choice drug for treatment of Acinetobacter baumannii infections. Extensive resistance to Carbapenemes, has become a major challenge for treatment of Acinetobacter baumannii infections. Infections caused by CRAB have limited treatment options and have been associated with high mortality rates in worldwide. Resistance to Carbapenemes first was reported in 1991 than its distribution was observed worldwide. Recent studies have revealed that 98% of Acinetobacter baumannii isolates in different Tehran hospitals are resistant to Carbapenemes (Imipenem and Meropenem). While the rate of resistance to Carbapenemes was reported to be 52/5% in 2009. Several mechanisms are involved in developing of CRAB. These mechanisms include the enzymatic hydrolysis mediated by the oxacillinases of Ambler class D OXA-type, Carbapenem hydrolyzing-β-lactamases of molecular class B and sometimes alteration of Penicillin-Binding Proteins (PBP) or increased activity efflux pumps [1]. Metallo-β-Lactamases (MBL) and oxacillinases are found to be more frequent. So far the oxacillinase genes such as blaOXA-23-like, blaOXA-24-like, blaOXA-51-like and blaOXA-58 like also MBLs such as Seoul metallo-β-lactamase Imipenemase (SIM), Sno Paolo metallo (SPM), New Delhi Metallo-β-lactamase (NDM), Verona Integron-encoded Metallo-β-lactamases (VIM) and Imipenemase (IMP) have been reported in Acinetobacter baumannii isolates. There have been numerous studies performed aiming to identify these mechanisms in Iran [2].

Habibeh Adibhesami1, Abbas Farahani2, Arezoo Asadi3 and Davoud Afshar1*


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An Epidemiologic Survey on Trichomonas Vaginalis Infection in Pregnant Women of Urmia City, North West of Iran, 2015

Background: Trichomoniasis is an extremely common infection worldwide and is associated with important public healthproblems, including amplification of HIV transmission. This symptomatic and asymptomatic disease is more frequently in pregnant women due to hormonal changes and reducing the vaginal acidity during pregnancy. Thus the aim of this study was to evaluate Trichomonas vaginalis infection in pregnant women of Urmia city, North West of Iranfor the first time in 2015.

Methods: This descriptive cross-sectional study was conducted on 800 pregnant women who referred to main medical laboratories in Urmia. Vaginal samples were obtainedfrom them and examined by wet mount and culture methods for the detection of T. vaginalis.

Results: According to the results, T. vaginalis was detected in 29 out of 800 participants (3.63%) by using culture methods whereas only 22 of 29 infected people were positive with the wet mount technique. Gestational age had a significant relation with Trichomoniasis (P<0.05) while age and symptoms showed no significant relation with Trichomoniasis (P>0.05).

Conclusion: This study showed low prevalence of T. vaginalis infection in the study population.Since clinical signs of trichomonal vaginitis are the same of other Sexually Transmitted Diseases (STD), a confirmatory laboratory diagnosis is necessary. Wet mount technique is not as well as culture method sensitive and accurate for detection of T. vaginalis.

Reza Abdolah Nezhad1* and Farzaneh Kaffashi Boukani2


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Properties and Applications of Plants of Origanum Sp. Genus

The genus Origanum consists of different aromatic and medicinal plants some of which are used in folk medicine and as food additives since ancient times. These plants have numerous and varied beneficial properties, among which are antibacterial, antifungal, antioxidant, anti-inflammatory, antitumor and antiviral. While a mixture of components present naturally in these plants confers myriad of benefits phenolic compounds in particular have great importance in biocidal and antioxidants properties. In this review we focus on the genus Origanum, discussing the beneficial and probed properties that have potential implications in health-care and dietetics.

José María García-Beltrán1 and María Ángeles Esteban1*


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The Impact of Seed-Borne Fungi Associated with Roasted Cashew (Anacardium Occidentale L) Nuts on Its Food Value, Mineral and Anti-Nutrient Contents and Human Health

Isolation and identification of seed-borne fungi associated with cashew nuts from source of production and market was carried out. The proximate, mineral and anti-nutrient composition of the source of production and the market samples of roasted cashew nuts were also investigated. The result of isolation of fungi associated with the nuts from source of production and the market showed that Claviceps purpurea, Aspergillus fischeri, Aspergillus carbonarius, Aspergillus flavus, Aspergillus tamrii and Aspergillus fumigatus were associated with seeds from samples from the two sources. The ash, lipid, carbohydrate and protein contents of the source sample were relatively higher, while the moisture, fibre and vitamin C content of the markets samples were relatively lower. The Sodium, Zinc, Nitrate, Nitrogen and phosphorus contents of the market samples were observed to be higher when compared with the source sample, while the phosphate, Magnesium, Calcium, Manganese and Copper contents of the source samples were higher than the market sample. The saponin and the cyanogenic glycoside content of both market and source samples was the same, while the alkaloid content of the source samples were relatively higher. The flavonoid content of the market sample was observed to be higher when compared with the source samples.

Ibiam, O. F. A1*, Nweke, A1 and Kanayochukwu, U. L2


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Stroma Features in Prostate Cancer Diagnosis and Prognosis

The oncogenesis of Prostate Cancer (PCa) is a process involving epithelial cells of the gland and their interaction with the stroma. Reactive stroma formation has been shown to be critical in the progression of many cancers. In PCa, the reactive stroma is unique when compared with other cancer types and characterized by replacing the normal well differentiated smooth muscle cells with fibroblasts and myofibroblasts. The Masson’s trichrome stain and immunohistochemistry (IHC) / immunofluorescence studies characterized these changes and a grading system of reactive stroma has been developed. In this review, the changes of the molecular and morphometric features of the reactive stroma during the progress of PCa, and their use in clinical implications in the diagnosis, prognosis prediction and potential treatment of PCa are discussed.

Guangjing Zhu1* and Robert W Veltri1


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The Role of Chloroplast Signals in Cold Acclimation in Arabidopsis

In the post-genome era, one of the main problems of plant genetics is to identify functions of genes. A massive change in gene expression is an important component of the cold acclimation process [1]. Around one thousand genes have been found to be differentially expressed following cold exposure in the model plant Arabidopsis thaliana. Transcriptional re-programming occurs during cold acclimation to induce expression of around 100 Cold-Regulated (COR) genes, responsible for producing cryoprotective molecules. Central to this transcriptional regulation are the CBF (C-repeat-Binding Factor) genes that encode AP2/ERF family transcription factors [2]. A general scheme of genetic control of cold stress responses can be represented as a network of transcription factors and genes that are directly responsible for morphological changes leading to cold resistance. It is well known that there are two main pathways of cold response: ABA-dependent and ABA-independent. There is also an intersection between abiotic and biotic response pathways as well as between different kinds of abiotic response pathways such as cold, dehydration and high light [3]. However, functions of most cold response genes are still not found. On the other hand, the agricultural range of many important crop species is limited by their maximum freezing tolerance capacity, and freezing stress-related damage can result in considerable crop productivity losses [4].

Novokreshchenova MG*


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The Technology Explosion in Biology and its Implications for Biotechnology and the Potential of Systems and Synthetic Biology

Technological and scientific breakthroughs have added novel products to those traditionally produced by biological means. In this letter to the editor, some of these recent trends are summarized to raise the awareness of the power of Biotechnology.

J Stefan Rokem*


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Unravelling Rhizospheric Diversity and Potential of Phytase Producing Microbes

Phosphorus (P) is considered the ultimate limiting nutrient for plants because of its form as insoluble complexes. To address P deficiency, different organic and inorganic fertilizers are added to soils. Inorganic P instantly become unavailable by forming complexes with metal ions and excess P-fertilizers application also leads to water eutrophication of P. Phytic Acid (PA; constitutes 15-50% of total P depending on soil types) as a component of organic P also form stable complexes and its natural degradation is almost impossible. Therefore, role of P solubilizing microbes in rhizosphere become important for P cycling. Several rhizospheric bacterial and fungal species have been reported to play important role in P solubilization in soil [1]. Based on several studies on diversity of P solubilizing microbes and enzymes in varying agro-ecosystems, soil P availability and its uptake by plants is mainly attributed to microbial phosphatases and plant exudates. Phytase producing microbes have gained recent interest due to their plant growth promoting abilities and P pollution management applications [2,3].

Vinod Kumar*, Ajar Nath Yadav, Abhishake Saxena, Punesh Sangwan and Harcharan Singh Dhaliwal


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